Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01507 | Not Available | Negative | 1717255 - 1717833 | 22404.5 |
| hypothetical protein | HMPREF1534_01508 | Not Available | Positive | 1717975 - 1718124 | 5537.59 |
| hypothetical protein | HMPREF1534_01509 | Not Available | Positive | 1718132 - 1719610 | 55883.1 |
| hypothetical protein | HMPREF1534_01510 | Not Available | Positive | 1719616 - 1720026 | 15456.9 |
| aspartate ammonia-lyase | HMPREF1534_01511 | Not Available | Negative | 1720125 - 1721558 | 52211.2 |
| hypothetical protein | HMPREF1534_01512 | Not Available | Negative | 1722052 - 1722942 | 32516.3 |
| hypothetical protein | HMPREF1534_01513 | Not Available | Positive | 1723461 - 1724186 | 26384.6 |
| dethiobiotin synthase | HMPREF1534_01514 | Not Available | Negative | 1724424 - 1725068 | 24325.9 |
| biotin biosynthesis protein bioc | HMPREF1534_01515 | Not Available | Negative | 1725089 - 1725844 | 28427.4 |
| hypothetical protein | HMPREF1534_01516 | Not Available | Negative | 1725879 - 1726529 | 24627.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


