Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01477 | Not Available | Positive | 1684230 - 1686185 | 74112.4 |
| pantothenate kinase | HMPREF1534_01478 | Not Available | Positive | 1686292 - 1687125 | 29440.9 |
| hypothetical protein | HMPREF1534_01479 | Not Available | Positive | 1687128 - 1687556 | 16743.0 |
| hypothetical protein | HMPREF1534_01480 | Not Available | Negative | 1687658 - 1687867 | 7864.5 |
| Trna-asp | Not Available | Not Available | Positive | 1688433 - 1688506 | Not Available |
| imidazole glycerol phosphate synthase subunit hish | HMPREF1534_01482 | Not Available | Positive | 1688835 - 1689425 | 22317.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | HMPREF1534_01483 | Not Available | Positive | 1689457 - 1690176 | 26667.3 |
| imidazole glycerol phosphate synthase subunit hisf | HMPREF1534_01484 | Not Available | Positive | 1690186 - 1690941 | 27129.3 |
| histidine biosynthesis hisie | HMPREF1534_01485 | Not Available | Positive | 1690966 - 1691577 | 23222.7 |
| hypothetical protein | HMPREF1534_01486 | Not Available | Positive | 1691584 - 1692327 | 28015.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


