Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphomethylpyrimidine synthase | HMPREF1534_01436 | Not Available | Positive | 1638592 - 1640295 | 63612.0 |
| hypothetical protein | HMPREF1534_01437 | Not Available | Positive | 1640370 - 1640891 | 19705.2 |
| thiazole biosynthesis protein thih | HMPREF1534_01438 | Not Available | Positive | 1641089 - 1642219 | 43172.7 |
| hypothetical protein | HMPREF1534_01439 | Not Available | Positive | 1642373 - 1643065 | 25107.4 |
| hypothetical protein | HMPREF1534_01440 | Not Available | Positive | 1643276 - 1643884 | 23175.0 |
| ribose-phosphate pyrophosphokinase | HMPREF1534_01441 | Not Available | Positive | 1644035 - 1644973 | 34172.3 |
| hypothetical protein | HMPREF1534_01442 | Not Available | Negative | 1645082 - 1646395 | 50640.5 |
| hypothetical protein | HMPREF1534_01443 | Not Available | Negative | 1646427 - 1647218 | 28822.4 |
| hypothetical protein | HMPREF1534_01444 | Not Available | Negative | 1647212 - 1648009 | 29553.9 |
| spermidine/putrescine import atp-binding protein pota | HMPREF1534_01445 | Not Available | Negative | 1648027 - 1649604 | 59452.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


