Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase, nadh/nadph, small subunit | HMPREF1534_01426 | Not Available | Negative | 1623785 - 1625185 | 51112.5 |
| hypothetical protein | HMPREF1534_01427 | Not Available | Negative | 1625166 - 1629644 | 164929.0 |
| diaminopimelate epimerase | HMPREF1534_01428 | Not Available | Positive | 1630169 - 1631011 | 30300.7 |
| ll-diaminopimelate aminotransferase | HMPREF1534_01429 | Not Available | Positive | 1631058 - 1632287 | 45836.8 |
| hypothetical protein | HMPREF1534_01430 | Not Available | Positive | 1632397 - 1634586 | 82097.8 |
| hypothetical protein | HMPREF1534_01431 | Not Available | Positive | 1634755 - 1635273 | 19895.2 |
| hypothetical protein | HMPREF1534_01432 | Not Available | Positive | 1635224 - 1636756 | 58009.9 |
| thiamine biosynthesis protein this | HMPREF1534_01433 | Not Available | Positive | 1636958 - 1637158 | 7135.71 |
| thiamine-phosphate pyrophosphorylase | HMPREF1534_01434 | Not Available | Positive | 1637155 - 1637793 | 23578.7 |
| thiazole synthase | HMPREF1534_01435 | Not Available | Positive | 1637806 - 1638579 | 27674.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


