Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-leu | Not Available | Not Available | Positive | 1615903 - 1615983 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1615992 - 1616064 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1616080 - 1616166 | Not Available |
| Trna-leu | Not Available | Not Available | Positive | 1616193 - 1616273 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1616320 - 1616392 | Not Available |
| carboxynorspermidine decarboxylase | HMPREF1534_01421 | Not Available | Negative | 1616567 - 1617730 | 44413.0 |
| hypothetical protein | HMPREF1534_01422 | Not Available | Negative | 1617759 - 1620125 | 90499.9 |
| superoxide dismutase | HMPREF1534_01423 | Not Available | Positive | 1620210 - 1620791 | 22103.0 |
| hypothetical protein | HMPREF1534_01424 | Not Available | Positive | 1621369 - 1621509 | 5277.25 |
| asparagine synthase (glutamine-hydrolyzing) | HMPREF1534_01425 | Not Available | Negative | 1622101 - 1623768 | 62761.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


