Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01356 | Not Available | Negative | 1542100 - 1543218 | 42389.7 |
| hypothetical protein | HMPREF1534_01357 | Not Available | Negative | 1543287 - 1544576 | 48823.7 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | HMPREF1534_01358 | Not Available | Negative | 1544573 - 1545337 | 28183.5 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | HMPREF1534_01359 | Not Available | Positive | 1545415 - 1545786 | 13976.8 |
| fructose-6-phosphate aldolase | HMPREF1534_01360 | Not Available | Positive | 1545973 - 1546629 | 23574.4 |
| hypothetical protein | HMPREF1534_01361 | Not Available | Negative | 1546693 - 1547520 | 31770.0 |
| hypothetical protein | HMPREF1534_01362 | Not Available | Negative | 1547768 - 1550098 | 88708.3 |
| aspartate carbamoyltransferase | HMPREF1534_01363 | Not Available | Positive | 1550258 - 1551199 | 36281.6 |
| aspartate carbamoyltransferase regulatory chain | HMPREF1534_01364 | Not Available | Positive | 1551213 - 1551677 | 17332.2 |
| hypothetical protein | HMPREF1534_01365 | Not Available | Positive | 1551674 - 1552342 | 25115.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


