Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01286 | Not Available | Negative | 1472201 - 1472953 | 27889.7 |
| hypothetical protein | HMPREF1534_01287 | Not Available | Positive | 1473055 - 1475370 | 88483.8 |
| hypothetical protein | HMPREF1534_01288 | Not Available | Positive | 1475393 - 1475641 | 9559.65 |
| hypothetical protein | HMPREF1534_01289 | Not Available | Positive | 1475718 - 1475966 | 8823.59 |
| hypothetical protein | HMPREF1534_01290 | Not Available | Positive | 1475991 - 1476131 | 5217.48 |
| hypothetical protein | HMPREF1534_01291 | Not Available | Positive | 1476258 - 1477061 | 29813.9 |
| Trna-lys | Not Available | Not Available | Positive | 1477152 - 1477227 | Not Available |
| Trna-lys | Not Available | Not Available | Positive | 1477247 - 1477322 | Not Available |
| hypothetical protein | HMPREF1534_01294 | Not Available | Positive | 1477515 - 1477898 | 14685.6 |
| hypothetical protein | HMPREF1534_01295 | Not Available | Positive | 1477935 - 1478594 | 25715.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


