Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01276 | Not Available | Positive | 1459633 - 1459938 | 11953.4 |
| crossover junction endodeoxyribonuclease ruvc | HMPREF1534_01277 | Not Available | Positive | 1459935 - 1460504 | 21151.2 |
| pullulanase, type i | HMPREF1534_01278 | Not Available | Positive | 1460542 - 1462536 | 74987.9 |
| mannonate dehydratase | HMPREF1534_01279 | Not Available | Positive | 1462582 - 1463760 | 44636.8 |
| hypothetical protein | HMPREF1534_01280 | Not Available | Negative | 1463743 - 1465977 | 82801.2 |
| isoleucyl-trna synthetase | HMPREF1534_01281 | Not Available | Positive | 1466333 - 1469818 | 132303.0 |
| hypothetical protein | HMPREF1534_01282 | Not Available | Positive | 1469844 - 1470224 | 14376.2 |
| hypothetical protein | HMPREF1534_01283 | Not Available | Positive | 1470297 - 1470944 | 24557.2 |
| hypothetical protein | HMPREF1534_01284 | Not Available | Positive | 1470934 - 1471881 | 36178.5 |
| hypothetical protein | HMPREF1534_01285 | Not Available | Positive | 1471878 - 1472204 | 12848.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


