Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01216 | Not Available | Negative | 1389763 - 1390446 | 25338.8 |
| hypothetical protein | HMPREF1534_01217 | Not Available | Negative | 1390457 - 1391053 | 23447.8 |
| hypothetical protein | HMPREF1534_01218 | Not Available | Negative | 1391034 - 1391471 | 16975.6 |
| hypothetical protein | HMPREF1534_01219 | Not Available | Negative | 1391492 - 1392346 | 31849.3 |
| hypothetical protein | HMPREF1534_01220 | Not Available | Negative | 1392579 - 1394174 | 61229.4 |
| hypothetical protein | HMPREF1534_01221 | Not Available | Negative | 1394301 - 1394690 | 15187.3 |
| hypothetical protein | HMPREF1534_01222 | Not Available | Positive | 1395752 - 1395958 | 7794.35 |
| hypothetical protein | HMPREF1534_01223 | Not Available | Negative | 1396053 - 1396157 | 3877.9 |
| hypothetical protein | HMPREF1534_01224 | Not Available | Negative | 1396173 - 1397669 | 57709.2 |
| pyruvate, phosphate dikinase | HMPREF1534_01225 | Not Available | Negative | 1397893 - 1400658 | 101773.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


