Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01166 | Not Available | Positive | 1346268 - 1347356 | 41744.4 |
| hypothetical protein | HMPREF1534_01167 | Not Available | Positive | 1347367 - 1347459 | 3621.25 |
| hypothetical protein | HMPREF1534_01168 | Not Available | Positive | 1347535 - 1347903 | 14084.1 |
| hypothetical protein | HMPREF1534_01169 | Not Available | Positive | 1347905 - 1348249 | 13555.6 |
| hypothetical protein | HMPREF1534_01170 | Not Available | Positive | 1348338 - 1350119 | 68575.3 |
| hypothetical protein | HMPREF1534_01171 | Not Available | Positive | 1350199 - 1350714 | 19245.2 |
| hsdr family type i site-specific deoxyribonuclease | HMPREF1534_01172 | Not Available | Positive | 1350761 - 1353895 | 119612.0 |
| hypothetical protein | HMPREF1534_01173 | Not Available | Positive | 1353908 - 1355101 | 46054.8 |
| recd/traa family helicase | HMPREF1534_01174 | Not Available | Positive | 1355136 - 1357406 | 85050.9 |
| hypothetical protein | HMPREF1534_01175 | Not Available | Positive | 1357384 - 1357626 | 9346.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


