Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01156 | Not Available | Negative | 1338271 - 1338840 | 21802.2 |
| excisionase family dna binding domain-containing protein | HMPREF1534_01157 | Not Available | Positive | 1339706 - 1339960 | 9910.08 |
| hypothetical protein | HMPREF1534_01158 | Not Available | Negative | 1339994 - 1340371 | 13887.5 |
| hypothetical protein | HMPREF1534_01159 | Not Available | Negative | 1340456 - 1340818 | 13707.6 |
| hypothetical protein | HMPREF1534_01160 | Not Available | Negative | 1340826 - 1341140 | 12132.2 |
| hypothetical protein | HMPREF1534_01161 | Not Available | Positive | 1341155 - 1341403 | 9517.6 |
| hypothetical protein | HMPREF1534_01162 | Not Available | Positive | 1342692 - 1342892 | 7497.09 |
| hypothetical protein | HMPREF1534_01163 | Not Available | Positive | 1342897 - 1344456 | 58732.4 |
| hypothetical protein | HMPREF1534_01164 | Not Available | Positive | 1344510 - 1345502 | 38217.6 |
| hypothetical protein | HMPREF1534_01165 | Not Available | Positive | 1345502 - 1346254 | 28388.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


