Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01056 | Not Available | Positive | 1236777 - 1238453 | 60931.1 |
| hypothetical protein | HMPREF1534_01057 | Not Available | Negative | 1238594 - 1239910 | 49947.6 |
| hypothetical protein | HMPREF1534_01058 | Not Available | Negative | 1239907 - 1241241 | 49930.5 |
| hypothetical protein | HMPREF1534_01059 | Not Available | Positive | 1241502 - 1243811 | 87651.3 |
| hypothetical protein | HMPREF1534_01060 | Not Available | Positive | 1243831 - 1244505 | 24905.2 |
| hypothetical protein | HMPREF1534_01061 | Not Available | Positive | 1244931 - 1247231 | 86033.2 |
| hypothetical protein | HMPREF1534_01062 | Not Available | Negative | 1247310 - 1247747 | 17730.5 |
| hypothetical protein | HMPREF1534_01063 | Not Available | Positive | 1248004 - 1248552 | 20597.9 |
| hypothetical protein | HMPREF1534_01064 | Not Available | Negative | 1248971 - 1249270 | 11534.2 |
| hypothetical protein | HMPREF1534_01065 | Not Available | Negative | 1249306 - 1249953 | 24323.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


