Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01046 | Not Available | Positive | 1222948 - 1223961 | 38439.8 |
| uvrabc system protein b | HMPREF1534_01047 | Not Available | Negative | 1223964 - 1225994 | 77680.7 |
| outer membrane assembly lipoprotein yfio | HMPREF1534_01048 | Not Available | Positive | 1226161 - 1226997 | 32411.3 |
| hypothetical protein | HMPREF1534_01049 | Not Available | Positive | 1227016 - 1227351 | 13004.3 |
| hypothetical protein | HMPREF1534_01050 | Not Available | Positive | 1227427 - 1227879 | 17064.7 |
| hypothetical protein | HMPREF1534_01051 | Not Available | Negative | 1228088 - 1230373 | 87094.0 |
| hypothetical protein | HMPREF1534_01052 | Not Available | Negative | 1230674 - 1231375 | 26288.5 |
| hypothetical protein | HMPREF1534_01053 | Not Available | Negative | 1231375 - 1233264 | 71222.2 |
| excinuclease abc subunit a | HMPREF1534_01054 | Not Available | Positive | 1233345 - 1236173 | 106064.0 |
| ybak/ebsc protein | HMPREF1534_01055 | Not Available | Positive | 1236185 - 1236670 | 17809.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


