Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03823 | Not Available | Positive | 4349008 - 4349637 | 23769.2 |
| tyrosyl-trna synthetase | HMPREF1534_03824 | Not Available | Positive | 4349717 - 4351009 | 48070.5 |
| hypothetical protein | HMPREF1534_03825 | Not Available | Negative | 4351103 - 4354357 | 121938.0 |
| Trna-gln | Not Available | Not Available | Positive | 4354494 - 4354567 | Not Available |
| hypothetical protein | HMPREF1534_03827 | Not Available | Negative | 4354698 - 4354922 | 8687.59 |
| hypothetical protein | HMPREF1534_03828 | Not Available | Negative | 4355379 - 4355876 | 18389.6 |
| hypothetical protein | HMPREF1534_03829 | Not Available | Negative | 4355892 - 4358180 | 87217.6 |
| hypothetical protein | HMPREF1534_03830 | Not Available | Negative | 4358146 - 4360620 | 94524.1 |
| hypothetical protein | HMPREF1534_03831 | Not Available | Positive | 4360754 - 4362121 | 51746.4 |
| hypothetical protein | HMPREF1534_03832 | Not Available | Positive | 4362141 - 4362830 | 25441.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


