Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03733 | Not Available | Positive | 4250144 - 4253548 | 129364.0 |
| hypothetical protein | HMPREF1534_03734 | Not Available | Positive | 4253564 - 4254175 | 24547.9 |
| hypothetical protein | HMPREF1534_03735 | Not Available | Positive | 4254216 - 4255784 | 60611.5 |
| hypothetical protein | HMPREF1534_03736 | Not Available | Negative | 4255904 - 4257082 | 44753.8 |
| hypothetical protein | HMPREF1534_03737 | Not Available | Negative | 4257170 - 4258342 | 42729.3 |
| hypothetical protein | HMPREF1534_03738 | Not Available | Negative | 4258451 - 4259344 | 31950.8 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | HMPREF1534_03739 | Not Available | Negative | 4259384 - 4260226 | 31829.9 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | HMPREF1534_03740 | Not Available | Negative | 4260404 - 4261810 | 52338.6 |
| por secretion system c-terminal sorting domain-containing protein | HMPREF1534_03741 | Not Available | Negative | 4262171 - 4262599 | 15632.7 |
| hypothetical protein | HMPREF1534_03742 | Not Available | Negative | 4262686 - 4263927 | 45598.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


