Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03623 | Not Available | Positive | 4112425 - 4112850 | 16147.3 |
| hypothetical protein | HMPREF1534_03624 | Not Available | Negative | 4113369 - 4113908 | 19913.2 |
| hypothetical protein | HMPREF1534_03625 | Not Available | Negative | 4113951 - 4114982 | 39223.8 |
| tat (twin-arginine translocation) pathway signal sequence | HMPREF1534_03626 | Not Available | Negative | 4114990 - 4116162 | 43618.7 |
| hypothetical protein | HMPREF1534_03627 | Not Available | Negative | 4116289 - 4116846 | 20785.2 |
| hypothetical protein | HMPREF1534_03628 | Not Available | Negative | 4117189 - 4117791 | 23472.4 |
| hypothetical protein | HMPREF1534_03629 | Not Available | Negative | 4117801 - 4119417 | 61988.0 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03630 | Not Available | Negative | 4119430 - 4122126 | 98660.1 |
| hypothetical protein | HMPREF1534_03631 | Not Available | Negative | 4123295 - 4124902 | 59929.7 |
| hypothetical protein | HMPREF1534_03632 | Not Available | Negative | 4124927 - 4126057 | 41711.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


