Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03603 | Not Available | Positive | 4093534 - 4093653 | 4463.46 |
| hypothetical protein | HMPREF1534_03604 | Not Available | Positive | 4093813 - 4094622 | 30893.3 |
| excisionase family dna binding domain-containing protein | HMPREF1534_03605 | Not Available | Negative | 4096240 - 4096551 | 11696.0 |
| hypothetical protein | HMPREF1534_03606 | Not Available | Negative | 4096560 - 4097024 | 17649.1 |
| hypothetical protein | HMPREF1534_03607 | Not Available | Negative | 4097201 - 4097455 | 9659.28 |
| hypothetical protein | HMPREF1534_03608 | Not Available | Negative | 4097792 - 4097890 | 3956.91 |
| hypothetical protein | HMPREF1534_03609 | Not Available | Positive | 4097970 - 4098140 | 6203.64 |
| methylglyoxal synthase | HMPREF1534_03610 | Not Available | Negative | 4098608 - 4099144 | 20470.6 |
| hypothetical protein | HMPREF1534_03611 | Not Available | Negative | 4099199 - 4100008 | 30843.7 |
| alpha-glucan phosphorylase | HMPREF1534_03612 | Not Available | Negative | 4100025 - 4102583 | 98124.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


