Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03573 | Not Available | Negative | 4069158 - 4070747 | 60283.4 |
| hypothetical protein | HMPREF1534_03574 | Not Available | Positive | 4070785 - 4071537 | 27445.3 |
| excisionase family dna binding domain-containing protein | HMPREF1534_03575 | Not Available | Positive | 4072017 - 4072319 | 11807.2 |
| hypothetical protein | HMPREF1534_03576 | Not Available | Negative | 4072397 - 4072759 | 13742.7 |
| hypothetical protein | HMPREF1534_03577 | Not Available | Negative | 4072772 - 4074007 | 47942.3 |
| rubredoxin | HMPREF1534_03578 | Not Available | Positive | 4074384 - 4074548 | 5894.84 |
| polyribonucleotide nucleotidyltransferase | HMPREF1534_03579 | Not Available | Negative | 4074718 - 4076853 | 78642.7 |
| hypothetical protein | HMPREF1534_03580 | Not Available | Positive | 4077067 - 4078215 | 42830.3 |
| transcription elongation factor grea | HMPREF1534_03581 | Not Available | Positive | 4078420 - 4078884 | 16804.4 |
| hypothetical protein | HMPREF1534_03582 | Not Available | Positive | 4078884 - 4079342 | 16951.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


