Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03433 | Not Available | Positive | 3927418 - 3930585 | 117939.0 |
| hypothetical protein | HMPREF1534_03434 | Not Available | Positive | 3930598 - 3931143 | 20527.7 |
| hypothetical protein | HMPREF1534_03435 | Not Available | Negative | 3931148 - 3932590 | 54914.1 |
| hypothetical protein | HMPREF1534_03436 | Not Available | Positive | 3932817 - 3934238 | 53396.1 |
| hypothetical protein | HMPREF1534_03437 | Not Available | Positive | 3934444 - 3935313 | 32749.5 |
| hypothetical protein | HMPREF1534_03438 | Not Available | Positive | 3935401 - 3936837 | 55054.7 |
| hypothetical protein | HMPREF1534_03439 | Not Available | Positive | 3936841 - 3937425 | 22376.9 |
| hypothetical protein | HMPREF1534_03440 | Not Available | Positive | 3937722 - 3938234 | 18935.2 |
| hypothetical protein | HMPREF1534_03441 | Not Available | Negative | 3938246 - 3938491 | 8939.06 |
| hypothetical protein | HMPREF1534_03442 | Not Available | Positive | 3938623 - 3938844 | 8896.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


