Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03413 | Not Available | Positive | 3895433 - 3896386 | 35295.3 |
| hypothetical protein | HMPREF1534_03414 | Not Available | Positive | 3896439 - 3897533 | 40126.9 |
| protein-export membrane protein secd | HMPREF1534_03415 | Not Available | Negative | 3897612 - 3900584 | 108774.0 |
| hypothetical protein | HMPREF1534_03416 | Not Available | Negative | 3900763 - 3902850 | 79194.9 |
| hypothetical protein | HMPREF1534_03417 | Not Available | Negative | 3902878 - 3903957 | 40437.9 |
| hypothetical protein | HMPREF1534_03418 | Not Available | Negative | 3903961 - 3904854 | 34008.5 |
| hypothetical protein | HMPREF1534_03419 | Not Available | Negative | 3904835 - 3905512 | 25286.3 |
| hypothetical protein | HMPREF1534_03420 | Not Available | Positive | 3905719 - 3905991 | 9267.21 |
| hypothetical protein | HMPREF1534_03421 | Not Available | Positive | 3906075 - 3909314 | 122883.0 |
| pp_03353 | HMPREF1534_03422 | Not Available | Positive | 3910153 - 3911169 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


