Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03403 | Not Available | Negative | 3883449 - 3884483 | 40091.8 |
| rna polymerase sigma-70 factor | HMPREF1534_03404 | Not Available | Negative | 3884529 - 3885089 | 21747.6 |
| hypothetical protein | HMPREF1534_03405 | Not Available | Negative | 3885272 - 3885928 | 24016.1 |
| phosphoenolpyruvate carboxykinase | HMPREF1534_03406 | Not Available | Negative | 3886038 - 3887645 | 59136.1 |
| uracil phosphoribosyltransferase | HMPREF1534_03407 | Not Available | Positive | 3887906 - 3888565 | 24420.5 |
| hypothetical protein | HMPREF1534_03408 | Not Available | Negative | 3888675 - 3889679 | 36717.1 |
| 2-oxoacid:acceptor oxidoreductase, alpha subunit | HMPREF1534_03409 | Not Available | Negative | 3889703 - 3891538 | 65730.0 |
| Trna-arg | Not Available | Not Available | Positive | 3891964 - 3892038 | Not Available |
| hypothetical protein | HMPREF1534_03411 | Not Available | Positive | 3892191 - 3893579 | 53279.7 |
| 2-amino-3-ketobutyrate coenzyme a ligase | HMPREF1534_03412 | Not Available | Negative | 3894069 - 3895259 | 43618.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


