Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03273 | Not Available | Negative | 3739145 - 3742585 | 127391.0 |
| hypothetical protein | HMPREF1534_03274 | Not Available | Negative | 3742730 - 3743692 | 36848.3 |
| rna polymerase sigma-70 factor | HMPREF1534_03275 | Not Available | Negative | 3743810 - 3744355 | 21908.6 |
| hypothetical protein | HMPREF1534_03276 | Not Available | Negative | 3744442 - 3744546 | 4192.13 |
| hypothetical protein | HMPREF1534_03277 | Not Available | Positive | 3745679 - 3747424 | 65066.6 |
| hypothetical protein | HMPREF1534_03278 | Not Available | Positive | 3747559 - 3748473 | 35985.7 |
| hypothetical protein | HMPREF1534_03279 | Not Available | Positive | 3748512 - 3748877 | 14187.5 |
| hypothetical protein | HMPREF1534_03280 | Not Available | Positive | 3748879 - 3749820 | 35790.0 |
| Trna-leu | Not Available | Not Available | Positive | 3750185 - 3750272 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3750289 - 3750361 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


