Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03203 | Not Available | Negative | 3654765 - 3657008 | 83284.8 |
| bifunctional purine biosynthesis protein purh | HMPREF1534_03204 | Not Available | Positive | 3657216 - 3658739 | 56195.1 |
| mreb/mrl family cell shape determining protein | HMPREF1534_03205 | Not Available | Positive | 3658830 - 3659852 | 36947.9 |
| rod shape-determining protein mrec | HMPREF1534_03206 | Not Available | Positive | 3659874 - 3660722 | 31384.3 |
| rod shape-determining protein mred | HMPREF1534_03207 | Not Available | Positive | 3660732 - 3661232 | 19033.1 |
| penicillin-binding protein 2 | HMPREF1534_03208 | Not Available | Positive | 3661233 - 3663083 | 69229.5 |
| rod shape-determining protein roda | HMPREF1534_03209 | Not Available | Positive | 3663064 - 3664518 | 54284.6 |
| gliding motility-associated lipoprotein gldh | HMPREF1534_03210 | Not Available | Negative | 3664515 - 3665033 | 19398.4 |
| hypothetical protein | HMPREF1534_03211 | Not Available | Negative | 3664972 - 3666444 | 55318.6 |
| dna polymerase iii, delta' subunit | HMPREF1534_03212 | Not Available | Negative | 3666463 - 3667590 | 43686.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


