Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03163 | Not Available | Positive | 3595769 - 3596929 | 41894.5 |
| hypothetical protein | HMPREF1534_03164 | Not Available | Positive | 3597166 - 3598344 | 44209.2 |
| hypothetical protein | HMPREF1534_03165 | Not Available | Positive | 3598341 - 3599231 | 33951.0 |
| hypothetical protein | HMPREF1534_03166 | Not Available | Positive | 3599264 - 3600823 | 59323.9 |
| hypothetical protein | HMPREF1534_03167 | Not Available | Positive | 3600834 - 3603068 | 85873.5 |
| hypothetical protein | HMPREF1534_03168 | Not Available | Positive | 3603114 - 3605009 | 71322.4 |
| hypothetical protein | HMPREF1534_03169 | Not Available | Negative | 3605096 - 3605545 | 16369.4 |
| mannose-6-phosphate isomerase, class i | HMPREF1534_03170 | Not Available | Negative | 3605585 - 3606556 | 36288.6 |
| hypothetical protein | HMPREF1534_03171 | Not Available | Negative | 3606673 - 3608247 | 56485.4 |
| tonb-dependent receptor | HMPREF1534_03172 | Not Available | Negative | 3608283 - 3611048 | 104491.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


