Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03154 | Not Available | Positive | 3584218 - 3585774 | 56825.6 |
| adenylyl-sulfate kinase | HMPREF1534_03155 | Not Available | Positive | 3585804 - 3586418 | 22680.7 |
| sulfate adenylyltransferase subunit 2 | HMPREF1534_03156 | Not Available | Positive | 3586430 - 3587341 | 35794.7 |
| sulfate adenylyltransferase subunit 1 | HMPREF1534_03157 | Not Available | Positive | 3587378 - 3588835 | 54520.5 |
| hypothetical protein | HMPREF1534_03158 | Not Available | Positive | 3588863 - 3589969 | 43463.3 |
| hypothetical protein | HMPREF1534_03159 | Not Available | Negative | 3590491 - 3591849 | 52811.7 |
| hypothetical protein | HMPREF1534_03160 | Not Available | Positive | 3592110 - 3592310 | 7376.92 |
| Tmrna,resume consensus sequence (at 89): tttatctggcaacgaaaa | Not Available | Not Available | Positive | 3592185 - 3592579 | Not Available |
| hypothetical protein | HMPREF1534_03161 | Not Available | Negative | 3592444 - 3592611 | 6526.72 |
| hypothetical protein | HMPREF1534_03162 | Not Available | Positive | 3592739 - 3595675 | 108905.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


