Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03144 | Not Available | Positive | 3564157 - 3567105 | 112111.0 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03145 | Not Available | Positive | 3567237 - 3570482 | 121458.0 |
| hypothetical protein | HMPREF1534_03146 | Not Available | Positive | 3570497 - 3572293 | 68726.7 |
| hypothetical protein | HMPREF1534_03147 | Not Available | Negative | 3572516 - 3575473 | 113427.0 |
| hypothetical protein | HMPREF1534_03148 | Not Available | Positive | 3575534 - 3576820 | 49043.0 |
| hypothetical protein | HMPREF1534_03149 | Not Available | Negative | 3576983 - 3578137 | 43831.5 |
| hypothetical protein | HMPREF1534_03150 | Not Available | Positive | 3578459 - 3580267 | 66780.8 |
| hypothetical protein | HMPREF1534_03151 | Not Available | Positive | 3580313 - 3581731 | 51434.8 |
| hypothetical protein | HMPREF1534_03152 | Not Available | Positive | 3582194 - 3583381 | 45248.3 |
| 3'(2'),5'-bisphosphate nucleotidase | HMPREF1534_03153 | Not Available | Positive | 3583396 - 3584205 | 30310.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


