Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excisionase family dna binding domain-containing protein | HMPREF1534_03132 | Not Available | Negative | 3550507 - 3551442 | 36228.9 |
| quasi-rsam protein, gg-bacteroidales system protein | HMPREF1534_03133 | Not Available | Positive | 3551860 - 3553002 | 44820.9 |
| hypothetical protein | HMPREF1534_03134 | Not Available | Positive | 3553009 - 3555216 | 83354.6 |
| hypothetical protein | HMPREF1534_03135 | Not Available | Positive | 3555232 - 3556206 | 36049.6 |
| hypothetical protein | HMPREF1534_03136 | Not Available | Positive | 3556213 - 3556776 | 21335.3 |
| hypothetical protein | HMPREF1534_03137 | Not Available | Positive | 3556784 - 3557584 | 30871.2 |
| hypothetical protein | HMPREF1534_03138 | Not Available | Positive | 3557592 - 3559337 | 67162.9 |
| hypothetical protein | HMPREF1534_03139 | Not Available | Negative | 3559843 - 3560076 | 8372.13 |
| Trna-ile | Not Available | Not Available | Positive | 3562503 - 3562579 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 3562593 - 3562666 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


