Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03102 | Not Available | Positive | 3521569 - 3522192 | 22830.8 |
| hypothetical protein | HMPREF1534_03103 | Not Available | Positive | 3522197 - 3522388 | 6929.53 |
| hypothetical protein | HMPREF1534_03104 | Not Available | Positive | 3522556 - 3523122 | 20763.9 |
| hypothetical protein | HMPREF1534_03105 | Not Available | Negative | 3523353 - 3524528 | 43979.2 |
| hypothetical protein | HMPREF1534_03106 | Not Available | Positive | 3524632 - 3526494 | 71841.2 |
| hypothetical protein | HMPREF1534_03107 | Not Available | Positive | 3526624 - 3526992 | 14190.0 |
| hypothetical protein | HMPREF1534_03108 | Not Available | Positive | 3527090 - 3527734 | 25191.0 |
| glycosyltransferase, gg-bacteroidales peptide system protein | HMPREF1534_03109 | Not Available | Positive | 3528161 - 3529267 | 43576.2 |
| hypothetical protein | HMPREF1534_03110 | Not Available | Positive | 3529282 - 3530841 | 60813.4 |
| hypothetical protein | HMPREF1534_03111 | Not Available | Positive | 3530843 - 3532111 | 48099.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


