Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparaginyl-trna synthetase | HMPREF1534_03032 | Not Available | Positive | 3446960 - 3448363 | 53498.2 |
| hypothetical protein | HMPREF1534_03033 | Not Available | Positive | 3448523 - 3449017 | 18404.4 |
| hypothetical protein | HMPREF1534_03034 | Not Available | Positive | 3449191 - 3449766 | 21509.8 |
| hypothetical protein | HMPREF1534_03035 | Not Available | Positive | 3449756 - 3449983 | 8548.07 |
| ribosomal protein l13 | HMPREF1534_03036 | Not Available | Positive | 3450253 - 3450714 | 16964.6 |
| 30s ribosomal protein s9 | HMPREF1534_03037 | Not Available | Positive | 3450721 - 3451107 | 14476.8 |
| 30s ribosomal protein s2 | HMPREF1534_03038 | Not Available | Positive | 3451241 - 3452083 | 30657.1 |
| elongation factor ts | HMPREF1534_03039 | Not Available | Positive | 3452207 - 3453196 | 35361.6 |
| hypothetical protein | HMPREF1534_03040 | Not Available | Negative | 3453279 - 3453644 | 13679.4 |
| redox-sensing transcriptional repressor rex | HMPREF1534_03041 | Not Available | Positive | 3453735 - 3454385 | 24385.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


