Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03011 | Not Available | Negative | 3422009 - 3422608 | 22923.7 |
| hypothetical protein | HMPREF1534_03012 | Not Available | Negative | 3422743 - 3423153 | 15705.5 |
| hypothetical protein | HMPREF1534_03013 | Not Available | Negative | 3423204 - 3423455 | 9432.45 |
| hypothetical protein | HMPREF1534_03014 | Not Available | Negative | 3423525 - 3424412 | 34750.8 |
| hypothetical protein | HMPREF1534_03015 | Not Available | Negative | 3424416 - 3425558 | 44651.6 |
| hypothetical protein | HMPREF1534_03016 | Not Available | Negative | 3425543 - 3425839 | 11191.1 |
| hypothetical protein | HMPREF1534_03017 | Not Available | Negative | 3426195 - 3427376 | 44842.5 |
| Trna-phe | Not Available | Not Available | Positive | 3427837 - 3427912 | Not Available |
| thiamine-monophosphate kinase | HMPREF1534_03019 | Not Available | Negative | 3428031 - 3429071 | 38264.8 |
| purine nucleoside phosphorylase i, inosine and guanosine-specific | HMPREF1534_03020 | Not Available | Negative | 3429081 - 3429890 | 29845.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


