Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon trak protein | HMPREF1534_02991 | Not Available | Positive | 3407853 - 3408476 | 23996.6 |
| hypothetical protein | HMPREF1534_02992 | Not Available | Positive | 3408473 - 3408772 | 10963.5 |
| conjugative transposon tram protein | HMPREF1534_02993 | Not Available | Positive | 3408723 - 3410030 | 48077.4 |
| conjugative transposon tran protein | HMPREF1534_02994 | Not Available | Positive | 3410080 - 3410994 | 34753.2 |
| hypothetical protein | HMPREF1534_02995 | Not Available | Positive | 3410991 - 3411578 | 21836.1 |
| hypothetical protein | HMPREF1534_02996 | Not Available | Positive | 3411600 - 3412061 | 17766.8 |
| hypothetical protein | HMPREF1534_02997 | Not Available | Positive | 3412058 - 3412537 | 18597.9 |
| hypothetical protein | HMPREF1534_02998 | Not Available | Negative | 3412606 - 3413760 | 42486.3 |
| hypothetical protein | HMPREF1534_02999 | Not Available | Positive | 3413939 - 3414661 | 26108.6 |
| hypothetical protein | HMPREF1534_03000 | Not Available | Negative | 3414683 - 3415918 | 46873.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


