Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02971 | Not Available | Positive | 3388383 - 3388904 | 20021.4 |
| hypothetical protein | HMPREF1534_02972 | Not Available | Positive | 3388912 - 3389802 | 33982.0 |
| hypothetical protein | HMPREF1534_02973 | Not Available | Positive | 3389809 - 3390174 | 13917.7 |
| hypothetical protein | HMPREF1534_02974 | Not Available | Positive | 3390194 - 3392182 | 77347.7 |
| hypothetical protein | HMPREF1534_02975 | Not Available | Positive | 3392244 - 3392810 | 21927.2 |
| hypothetical protein | HMPREF1534_02976 | Not Available | Negative | 3392929 - 3394953 | 76831.8 |
| hypothetical protein | HMPREF1534_02977 | Not Available | Negative | 3394990 - 3396213 | 46470.1 |
| hypothetical protein | HMPREF1534_02978 | Not Available | Negative | 3396222 - 3396644 | 16393.0 |
| hypothetical protein | HMPREF1534_02979 | Not Available | Positive | 3397372 - 3398166 | 30056.6 |
| hypothetical protein | HMPREF1534_02980 | Not Available | Positive | 3398175 - 3398624 | 17176.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


