Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02941 | Not Available | Negative | 3357075 - 3357320 | 9373.25 |
| hypothetical protein | HMPREF1534_02942 | Not Available | Negative | 3357692 - 3358027 | 12730.6 |
| rhs repeat-associated core domain-containing protein | HMPREF1534_02943 | Not Available | Negative | 3358024 - 3358944 | 33857.8 |
| hypothetical protein | HMPREF1534_02944 | Not Available | Positive | 3359024 - 3359104 | 3443.17 |
| yd repeat (two copies) | HMPREF1534_02945 | Not Available | Negative | 3359105 - 3363009 | 147167.0 |
| hypothetical protein | HMPREF1534_02946 | Not Available | Negative | 3363093 - 3364469 | 51986.2 |
| hypothetical protein | HMPREF1534_02947 | Not Available | Negative | 3364466 - 3364939 | 17395.3 |
| hypothetical protein | HMPREF1534_02948 | Not Available | Negative | 3364985 - 3366343 | 52307.2 |
| hypothetical protein | HMPREF1534_02949 | Not Available | Negative | 3366355 - 3368163 | 66019.2 |
| hypothetical protein | HMPREF1534_02950 | Not Available | Negative | 3368281 - 3368679 | 15172.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


