Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02911 | Not Available | Positive | 3329033 - 3329326 | 11678.1 |
| hypothetical protein | HMPREF1534_02912 | Not Available | Positive | 3329383 - 3330087 | 26191.5 |
| prtrc system thif family protein | HMPREF1534_02913 | Not Available | Negative | 3330171 - 3330962 | 29551.7 |
| prtrc system protein b | HMPREF1534_02914 | Not Available | Negative | 3330959 - 3331660 | 26717.8 |
| hypothetical protein | HMPREF1534_02915 | Not Available | Negative | 3331671 - 3332780 | 43096.0 |
| prtrc system protein c | HMPREF1534_02916 | Not Available | Negative | 3332817 - 3333038 | 8347.99 |
| prtrc system protein e | HMPREF1534_02917 | Not Available | Negative | 3333060 - 3334040 | 36496.6 |
| hypothetical protein | HMPREF1534_02918 | Not Available | Negative | 3334060 - 3334269 | 7985.7 |
| hypothetical protein | HMPREF1534_02919 | Not Available | Negative | 3334288 - 3334500 | 7770.42 |
| hypothetical protein | HMPREF1534_02920 | Not Available | Negative | 3334800 - 3336572 | 66523.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


