Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02891 | Not Available | Positive | 3306769 - 3307956 | 44540.6 |
| hypothetical protein | HMPREF1534_02892 | Not Available | Negative | 3308174 - 3309388 | 47010.2 |
| hypothetical protein | HMPREF1534_02893 | Not Available | Positive | 3309475 - 3310050 | 22152.1 |
| hypothetical protein | HMPREF1534_02894 | Not Available | Positive | 3310029 - 3311111 | 41049.5 |
| hypothetical protein | HMPREF1534_02895 | Not Available | Positive | 3311251 - 3312225 | 37662.4 |
| hypothetical protein | HMPREF1534_02896 | Not Available | Positive | 3312209 - 3313015 | 31462.5 |
| trna (cmo5u34)-methyltransferase | HMPREF1534_02897 | Not Available | Positive | 3313005 - 3313799 | 30714.9 |
| hypothetical protein | HMPREF1534_02898 | Not Available | Positive | 3313796 - 3314473 | 26342.2 |
| hypothetical protein | HMPREF1534_02899 | Not Available | Positive | 3314470 - 3315165 | 27416.6 |
| hypothetical protein | HMPREF1534_02900 | Not Available | Positive | 3315173 - 3316969 | 66607.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


