Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excisionase family dna binding domain-containing protein | HMPREF1534_02881 | Not Available | Positive | 3292944 - 3293165 | 8604.55 |
| hypothetical protein | HMPREF1534_02882 | Not Available | Positive | 3293196 - 3293669 | 17359.7 |
| hypothetical protein | HMPREF1534_02883 | Not Available | Positive | 3293781 - 3294296 | 19288.9 |
| hypothetical protein | HMPREF1534_02884 | Not Available | Positive | 3294438 - 3294875 | 16695.8 |
| hypothetical protein | HMPREF1534_02885 | Not Available | Positive | 3294872 - 3296104 | 46525.9 |
| hypothetical protein | HMPREF1534_02886 | Not Available | Positive | 3296111 - 3296647 | 19787.2 |
| hypothetical protein | HMPREF1534_02887 | Not Available | Positive | 3296675 - 3297097 | 16450.0 |
| amino acid adenylation domain-containing protein | HMPREF1534_02888 | Not Available | Positive | 3297562 - 3303726 | 235466.0 |
| hypothetical protein | HMPREF1534_02889 | Not Available | Positive | 3303729 - 3304319 | 22271.2 |
| hypothetical protein | HMPREF1534_02890 | Not Available | Positive | 3304337 - 3306730 | 91294.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


