Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02831 | Not Available | Negative | 3234098 - 3235948 | 70818.0 |
| hypothetical protein | HMPREF1534_02832 | Not Available | Positive | 3236190 - 3237785 | 62549.8 |
| hypothetical protein | HMPREF1534_02833 | Not Available | Negative | 3237908 - 3239266 | 49238.3 |
| 4-alpha-glucanotransferase | HMPREF1534_02834 | Not Available | Negative | 3239281 - 3241959 | 104336.0 |
| dna gyrase, b subunit | HMPREF1534_02835 | Not Available | Negative | 3242324 - 3244288 | 73141.6 |
| 30s ribosomal protein s20 | HMPREF1534_02836 | Not Available | Negative | 3244691 - 3244945 | 9771.14 |
| Trna-glu | Not Available | Not Available | Positive | 3244986 - 3245060 | Not Available |
| dna repair protein reco | HMPREF1534_02838 | Not Available | Positive | 3245245 - 3245970 | 28346.3 |
| hypothetical protein | HMPREF1534_02839 | Not Available | Negative | 3246508 - 3246957 | 15894.4 |
| cell division protein ftsz | HMPREF1534_02840 | Not Available | Negative | 3246978 - 3248285 | 48186.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


