Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02821 | Not Available | Positive | 3218355 - 3218936 | 22178.7 |
| hypothetical protein | HMPREF1534_02822 | Not Available | Positive | 3219012 - 3220199 | 44630.9 |
| hypothetical protein | HMPREF1534_02823 | Not Available | Positive | 3220468 - 3220665 | 8117.97 |
| hypothetical protein | HMPREF1534_02824 | Not Available | Negative | 3221199 - 3221585 | 13697.6 |
| hypothetical protein | HMPREF1534_02825 | Not Available | Negative | 3221827 - 3224133 | 87394.5 |
| hypothetical protein | HMPREF1534_02826 | Not Available | Negative | 3224208 - 3225656 | 52538.0 |
| hypothetical protein | HMPREF1534_02827 | Not Available | Negative | 3225681 - 3226853 | 43147.6 |
| hypothetical protein | HMPREF1534_02828 | Not Available | Negative | 3226891 - 3228546 | 62689.5 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02829 | Not Available | Negative | 3228570 - 3231584 | 111276.0 |
| hypothetical protein | HMPREF1534_02830 | Not Available | Negative | 3231675 - 3233891 | 84118.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


