Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02801 | Not Available | Negative | 3195770 - 3196653 | 34207.1 |
| ribosome maturation factor rimp | HMPREF1534_02802 | Not Available | Positive | 3196886 - 3197353 | 17845.2 |
| transcription termination factor nusa | HMPREF1534_02803 | Not Available | Positive | 3197356 - 3198612 | 47662.9 |
| translation initiation factor if-2 | HMPREF1534_02804 | Not Available | Positive | 3198653 - 3201649 | 110807.0 |
| hypothetical protein | HMPREF1534_02805 | Not Available | Positive | 3201745 - 3202248 | 18127.1 |
| fes assembly protein sufb | HMPREF1534_02806 | Not Available | Positive | 3202252 - 3203703 | 54156.0 |
| fes assembly atpase sufc | HMPREF1534_02807 | Not Available | Positive | 3203722 - 3204474 | 27623.6 |
| fes assembly protein sufd | HMPREF1534_02808 | Not Available | Positive | 3204477 - 3205820 | 50432.4 |
| sufs family cysteine desulfurase | HMPREF1534_02809 | Not Available | Positive | 3205833 - 3207047 | 44836.9 |
| hypothetical protein | HMPREF1534_02810 | Not Available | Negative | 3207201 - 3207806 | 21806.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


