Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02791 | Not Available | Positive | 3182051 - 3182314 | 10448.7 |
| hypothetical protein | HMPREF1534_02792 | Not Available | Positive | 3182350 - 3183012 | 25784.1 |
| hypothetical protein | HMPREF1534_02793 | Not Available | Positive | 3183188 - 3183832 | 24683.6 |
| rna polymerase sigma-70 factor | HMPREF1534_02794 | Not Available | Positive | 3184279 - 3184866 | 23107.9 |
| hypothetical protein | HMPREF1534_02795 | Not Available | Positive | 3184929 - 3185924 | 38065.3 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02796 | Not Available | Positive | 3186143 - 3189427 | 121164.0 |
| hypothetical protein | HMPREF1534_02797 | Not Available | Positive | 3189447 - 3191108 | 62844.1 |
| hypothetical protein | HMPREF1534_02798 | Not Available | Positive | 3191136 - 3192335 | 46251.9 |
| hypothetical protein | HMPREF1534_02799 | Not Available | Positive | 3192536 - 3194992 | 93500.9 |
| hypothetical protein | HMPREF1534_02800 | Not Available | Negative | 3195179 - 3195559 | 13989.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


