Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetylglutamate kinase | HMPREF1534_02781 | Not Available | Positive | 3174005 - 3174778 | 27376.5 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_02782 | Not Available | Positive | 3174795 - 3175349 | 21910.2 |
| hypothetical protein | HMPREF1534_02783 | Not Available | Positive | 3175339 - 3175809 | 18119.8 |
| hypothetical protein | HMPREF1534_02784 | Not Available | Negative | 3176008 - 3176724 | 25468.5 |
| hypothetical protein | HMPREF1534_02785 | Not Available | Positive | 3176821 - 3177534 | 27541.7 |
| hypothetical protein | HMPREF1534_02786 | Not Available | Positive | 3177706 - 3179406 | 65361.2 |
| hypothetical protein | HMPREF1534_02787 | Not Available | Positive | 3179590 - 3179688 | 3799.72 |
| hypothetical protein | HMPREF1534_02788 | Not Available | Positive | 3179902 - 3180318 | 15910.2 |
| hypothetical protein | HMPREF1534_02789 | Not Available | Positive | 3180392 - 3180634 | 8334.75 |
| hypothetical protein | HMPREF1534_02790 | Not Available | Positive | 3180769 - 3182043 | 49106.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


