Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02771 | Not Available | Negative | 3161263 - 3161583 | 12454.5 |
| hypothetical protein | HMPREF1534_02772 | Not Available | Negative | 3161583 - 3162047 | 17293.2 |
| hypothetical protein | HMPREF1534_02773 | Not Available | Negative | 3162164 - 3162568 | 16386.6 |
| hypothetical protein | HMPREF1534_02774 | Not Available | Negative | 3162572 - 3163858 | 48106.4 |
| hypothetical protein | HMPREF1534_02775 | Not Available | Positive | 3163994 - 3164518 | 19876.7 |
| hypothetical protein | HMPREF1534_02776 | Not Available | Positive | 3164527 - 3167430 | 110671.0 |
| hypothetical protein | HMPREF1534_02777 | Not Available | Positive | 3167436 - 3169058 | 61266.4 |
| dna topoisomerase i | HMPREF1534_02778 | Not Available | Positive | 3169180 - 3171522 | 88044.4 |
| shikimate kinase | HMPREF1534_02779 | Not Available | Positive | 3171519 - 3172046 | 20287.4 |
| biosynthetic arginine decarboxylase | HMPREF1534_02780 | Not Available | Positive | 3172108 - 3174000 | 71698.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


