Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02751 | Not Available | Negative | 3131025 - 3131975 | 36307.2 |
| hypothetical protein | HMPREF1534_02752 | Not Available | Negative | 3131972 - 3132385 | 15378.6 |
| hypothetical protein | HMPREF1534_02753 | Not Available | Negative | 3132570 - 3133049 | 18546.9 |
| hypothetical protein | HMPREF1534_02754 | Not Available | Negative | 3133150 - 3133632 | 18399.8 |
| hypothetical protein | HMPREF1534_02755 | Not Available | Positive | 3134030 - 3134341 | 12251.8 |
| excisionase family dna binding domain-containing protein | HMPREF1534_02756 | Not Available | Positive | 3134424 - 3134732 | 12296.0 |
| hypothetical protein | HMPREF1534_02757 | Not Available | Negative | 3134965 - 3135327 | 13752.8 |
| hypothetical protein | HMPREF1534_02758 | Not Available | Negative | 3135324 - 3136535 | 46100.8 |
| hypothetical protein | HMPREF1534_02759 | Not Available | Negative | 3136600 - 3137832 | 46763.1 |
| hypothetical protein | HMPREF1534_02760 | Not Available | Negative | 3138170 - 3138667 | 19820.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


