Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02741 | Not Available | Negative | 3117720 - 3118148 | 16259.5 |
| hypothetical protein | HMPREF1534_02742 | Not Available | Negative | 3118160 - 3119164 | 37703.5 |
| hypothetical protein | HMPREF1534_02743 | Not Available | Negative | 3119211 - 3120968 | 65190.3 |
| hypothetical protein | HMPREF1534_02744 | Not Available | Positive | 3121051 - 3121959 | 33144.0 |
| butyrate kinase | HMPREF1534_02745 | Not Available | Positive | 3121974 - 3123038 | 38361.3 |
| hypothetical protein | HMPREF1534_02746 | Not Available | Negative | 3123856 - 3126369 | 88290.0 |
| hypothetical protein | HMPREF1534_02747 | Not Available | Negative | 3126743 - 3128545 | 69843.7 |
| hypothetical protein | HMPREF1534_02748 | Not Available | Negative | 3128542 - 3128937 | 13895.5 |
| hypothetical protein | HMPREF1534_02749 | Not Available | Negative | 3129514 - 3129999 | 17992.6 |
| hypothetical protein | HMPREF1534_02750 | Not Available | Negative | 3130237 - 3130989 | 28546.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


