Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02701 | Not Available | Negative | 3077477 - 3079372 | 71495.2 |
| hypothetical protein | HMPREF1534_02702 | Not Available | Negative | 3079396 - 3079821 | 16132.1 |
| hypothetical protein | HMPREF1534_02703 | Not Available | Negative | 3080076 - 3081362 | 49043.0 |
| riboflavin biosynthesis protein ribf | HMPREF1534_02704 | Not Available | Negative | 3081665 - 3082585 | 35185.4 |
| epoxide hydrolase domain-like phosphatase | HMPREF1534_02705 | Not Available | Negative | 3082585 - 3083199 | 23859.3 |
| calcium-translocating p-type atpase, pmca-type | HMPREF1534_02706 | Not Available | Negative | 3083216 - 3085855 | 96988.8 |
| Trna-met | Not Available | Not Available | Positive | 3086014 - 3086090 | Not Available |
| hypothetical protein | HMPREF1534_02708 | Not Available | Positive | 3086242 - 3087510 | 49243.0 |
| hypothetical protein | HMPREF1534_02709 | Not Available | Positive | 3087620 - 3088597 | 38731.0 |
| hypothetical protein | HMPREF1534_02710 | Not Available | Positive | 3088624 - 3088743 | 4730.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


