Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02681 | Not Available | Positive | 3056129 - 3056605 | 17348.6 |
| glycosyl hydrolase family 109 protein 1 | HMPREF1534_02682 | Not Available | Positive | 3056710 - 3058119 | 53589.3 |
| hypothetical protein | HMPREF1534_02683 | Not Available | Positive | 3058879 - 3059292 | 15378.6 |
| hypothetical protein | HMPREF1534_02684 | Not Available | Positive | 3059289 - 3060239 | 36307.2 |
| hypothetical protein | HMPREF1534_02685 | Not Available | Positive | 3060275 - 3061027 | 28546.3 |
| hypothetical protein | HMPREF1534_02686 | Not Available | Positive | 3061265 - 3061750 | 17992.6 |
| hypothetical protein | HMPREF1534_02687 | Not Available | Positive | 3062327 - 3062722 | 13881.5 |
| hypothetical protein | HMPREF1534_02688 | Not Available | Positive | 3062719 - 3064518 | 69735.6 |
| hypothetical protein | HMPREF1534_02689 | Not Available | Negative | 3064611 - 3065225 | 24272.7 |
| hypothetical protein | HMPREF1534_02690 | Not Available | Negative | 3065608 - 3066579 | 38005.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


