Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02651 | Not Available | Negative | 3019361 - 3020803 | 55413.9 |
| hypothetical protein | HMPREF1534_02652 | Not Available | Negative | 3020995 - 3022929 | 74615.3 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02653 | Not Available | Negative | 3022948 - 3026397 | 127723.0 |
| hypothetical protein | HMPREF1534_02654 | Not Available | Negative | 3026571 - 3027584 | 38661.1 |
| rna polymerase sigma-70 factor | HMPREF1534_02655 | Not Available | Negative | 3027662 - 3028207 | 21583.0 |
| hypothetical protein | HMPREF1534_02656 | Not Available | Negative | 3028311 - 3029531 | 46977.9 |
| glutamyl-trna synthetase | HMPREF1534_02657 | Not Available | Negative | 3029543 - 3031060 | 57946.4 |
| hypothetical protein | HMPREF1534_02658 | Not Available | Positive | 3031142 - 3033199 | 78940.9 |
| hypothetical protein | HMPREF1534_02659 | Not Available | Negative | 3033174 - 3033659 | 18545.2 |
| hypothetical protein | HMPREF1534_02660 | Not Available | Negative | 3033666 - 3034376 | 26384.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


