Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine recombinase xerc | HMPREF1534_02641 | Not Available | Negative | 3007014 - 3007895 | 33775.2 |
| 30s ribosomal protein s21 | HMPREF1534_02642 | Not Available | Negative | 3007973 - 3008164 | 7484.31 |
| hypothetical protein | HMPREF1534_02643 | Not Available | Positive | 3008334 - 3010139 | 67964.6 |
| hypothetical protein | HMPREF1534_02644 | Not Available | Positive | 3010149 - 3010688 | 19183.1 |
| outer membrane autotransporter barrel domain-containing protein | HMPREF1534_02645 | Not Available | Positive | 3010732 - 3011223 | 18344.0 |
| hypothetical protein | HMPREF1534_02646 | Not Available | Negative | 3011280 - 3011984 | 26304.2 |
| hypothetical protein | HMPREF1534_02647 | Not Available | Negative | 3012028 - 3013407 | 51753.0 |
| hypothetical protein | HMPREF1534_02648 | Not Available | Positive | 3013552 - 3015849 | 86748.9 |
| hypothetical protein | HMPREF1534_02649 | Not Available | Negative | 3016091 - 3018196 | 80299.8 |
| hypothetical protein | HMPREF1534_02650 | Not Available | Negative | 3018234 - 3019343 | 42549.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


