Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l11 | HMPREF1534_02631 | Not Available | Negative | 3003577 - 3004020 | 15753.4 |
| transcription termination/antitermination factor nusg | HMPREF1534_02632 | Not Available | Negative | 3004080 - 3004622 | 20127.3 |
| preprotein translocase, sece subunit | HMPREF1534_02633 | Not Available | Negative | 3004638 - 3004832 | 7521.19 |
| Trna-trp | Not Available | Not Available | Positive | 3004846 - 3004921 | Not Available |
| elongation factor tu | HMPREF1534_02635 | Not Available | Negative | 3004981 - 3006165 | 43554.7 |
| Trna-thr | Not Available | Not Available | Positive | 3006217 - 3006288 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3006297 - 3006369 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 3006401 - 3006483 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 3006527 - 3006603 | Not Available |
| ribosomal subunit interface protein | HMPREF1534_02640 | Not Available | Negative | 3006700 - 3006999 | 11223.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


