Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s5 | HMPREF1534_02601 | Not Available | Negative | 2978627 - 2979142 | 17851.9 |
| 50s ribosomal protein l18 | HMPREF1534_02602 | Not Available | Negative | 2979149 - 2979490 | 12645.5 |
| 50s ribosomal protein l6 | HMPREF1534_02603 | Not Available | Negative | 2979512 - 2980081 | 20822.3 |
| 30s ribosomal protein s8 | HMPREF1534_02604 | Not Available | Negative | 2980096 - 2980491 | 14579.0 |
| 30s ribosomal protein s14 | HMPREF1534_02605 | Not Available | Negative | 2980550 - 2980849 | 11093.7 |
| 50s ribosomal protein l5 | HMPREF1534_02606 | Not Available | Negative | 2980856 - 2981413 | 20846.8 |
| 50s ribosomal protein l24 | HMPREF1534_02607 | Not Available | Negative | 2981413 - 2981736 | 11616.1 |
| 50s ribosomal protein l14 | HMPREF1534_02608 | Not Available | Negative | 2981757 - 2982122 | 13086.1 |
| 30s ribosomal protein s17 | HMPREF1534_02609 | Not Available | Negative | 2982125 - 2982382 | 9981.21 |
| 50s ribosomal protein l29 | HMPREF1534_02610 | Not Available | Negative | 2982394 - 2982588 | 7472.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


